title: "Meta-analysis of genes"
subtitle: "Draft, 25-05-2025v6c"
output:
html_document:
toc: true
toc_float:
collapsed: false
smooth_scroll: false
code_folding: hide
number_sections: false
theme: spacelab
---
# MA_HC_Excitadoras_F {- .tabset .tabset-fade .tabset-pills}
```r
library(dplyr)
library(knitr)
library(DT)
load("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/MA_HC_Excitadoras_F.RData")
```ENSG00000011083
Statistics of ENSG00000011083 meta-analisys
kable(sig.genes.df['ENSG00000011083',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000011083 | SLC6A7 | -0.6498787 | -0.5765871 | -0.5032955 | 0 | 0.0303424 | 0.8617155 | 0.0373943 | 0 | 0 | 1 | 0 | 0 | 49.85035 | 2 | 2 | Study43 | 0.5007604 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000011083_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000011083_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000011083_INFLUENCE.png")
ENSG00000054803
Statistics of ENSG00000054803 meta-analisys
kable(sig.genes.df['ENSG00000054803',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000054803 | CBLN4 | -0.3565155 | -0.3123571 | -0.2681988 | 0 | 0.8764158 | 0.3491852 | 0.0225302 | 0 | 0 | 1 | 0 | 0 | 40.12973 | 2 | 1 | Study43 | 0.5024222 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000054803_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000054803_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000054803_INFLUENCE.png")
ENSG00000070729
Statistics of ENSG00000070729 meta-analisys
kable(sig.genes.df['ENSG00000070729',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000070729 | CNGB1 | 1.572374 | 1.741455 | 1.910535 | 0 | 0.9681705 | 0.3251369 | 0.0862671 | 0 | 0 | 1 | 0 | 0 | 86.26479 | 2 | 2 | Study43 | 0.5118424 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000070729_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000070729_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000070729_INFLUENCE.png")
ENSG00000105339
Statistics of ENSG00000105339 meta-analisys
kable(sig.genes.df['ENSG00000105339',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000105339 | DENND3 | -1.048964 | -0.9304216 | -0.811879 | 0 | 0.067819 | 0.966659 | 0.0604821 | 0 | 0 | 1 | 0 | 0 | 49.68336 | 3 | 3 | Study43 | 0.4364518 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000105339_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000105339_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000105339_INFLUENCE.png")
ENSG00000117707
Statistics of ENSG00000117707 meta-analisys
kable(sig.genes.df['ENSG00000117707',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000117707 | PROX1 | 0.8270834 | 0.9412668 | 1.05545 | 0 | 0.8143646 | 0.366833 | 0.0582579 | 0 | 0 | 1 | 0 | 0 | 54.84216 | 2 | 2 | Study43 | 0.5145997 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000117707_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000117707_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000117707_INFLUENCE.png")
ENSG00000128564
Statistics of ENSG00000128564 meta-analisys
kable(sig.genes.df['ENSG00000128564',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000128564 | VGF | -0.4740472 | -0.4209735 | -0.3678998 | 0 | 0.1475378 | 0.7008995 | 0.0270789 | 0 | 0 | 1 | 0 | 0 | 50.66699 | 2 | 2 | Study43 | 0.5014015 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000128564_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000128564_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000128564_INFLUENCE.png")
ENSG00000130962
Statistics of ENSG00000130962 meta-analisys
kable(sig.genes.df['ENSG00000130962',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000130962 | PRRG1 | -0.5235832 | -0.4744203 | -0.4252574 | 0 | 0.9231705 | 0.3366439 | 0.0250836 | 0 | 0 | 1 | 0 | 0 | 75.6484 | 2 | 2 | Study43 | 0.5045986 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000130962_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000130962_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000130962_INFLUENCE.png")
ENSG00000134107
Statistics of ENSG00000134107 meta-analisys
kable(sig.genes.df['ENSG00000134107',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000134107 | BHLHE40 | -0.6183704 | -0.5449062 | -0.4714421 | 0 | 1.313019 | 0.5186586 | 0.0374824 | 0 | 0 | 1 | 0 | 0 | 44.22593 | 3 | 3 | Study43 | 0.4265538 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000134107_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000134107_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000134107_INFLUENCE.png")
ENSG00000138780
Statistics of ENSG00000138780 meta-analisys
kable(sig.genes.df['ENSG00000138780',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000138780 | GSTCD | -0.5455971 | -0.4878161 | -0.4300352 | 0 | 1.814845 | 0.4035631 | 0.0294806 | 0 | 0 | 1 | 0 | 0 | 57.51367 | 3 | 3 | Study43,syn52293442_hc | 0.3173154 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000138780_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000138780_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000138780_INFLUENCE.png")
ENSG00000141522
Statistics of ENSG00000141522 meta-analisys
kable(sig.genes.df['ENSG00000141522',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000141522 | ARHGDIA | -0.3260614 | -0.283986 | -0.2419107 | 0 | 0.6480517 | 0.7232315 | 0.0214674 | 0 | 0 | 1 | 0 | 0 | 36.41811 | 3 | 3 | Study43 | 0.4260803 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000141522_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000141522_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000141522_INFLUENCE.png")
ENSG00000143933
Statistics of ENSG00000143933 meta-analisys
kable(sig.genes.df['ENSG00000143933',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000143933 | CALM2 | -2.224914 | -2.007216 | -1.789517 | 0 | 0.2700876 | 0.603273 | 0.1110726 | 0 | 0 | 1 | 0 | 0 | 68.94253 | 2 | 2 | Study43 | 0.5059813 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000143933_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000143933_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000143933_INFLUENCE.png")
ENSG00000144834
Statistics of ENSG00000144834 meta-analisys
kable(sig.genes.df['ENSG00000144834',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000144834 | TAGLN3 | -0.8215358 | -0.7171161 | -0.6126965 | 0 | 0.574452 | 0.4484952 | 0.0532763 | 0 | 0 | 1 | 0 | 0 | 37.7456 | 2 | 2 | Study43 | 0.5050353 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000144834_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000144834_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000144834_INFLUENCE.png")
ENSG00000151474
Statistics of ENSG00000151474 meta-analisys
kable(sig.genes.df['ENSG00000151474',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000151474 | FRMD4A | 0.5473158 | 0.6068593 | 0.6664028 | 0 | 0.2151348 | 0.898016 | 0.0303799 | 0 | 0 | 1 | 0 | 0 | 84.54406 | 3 | 3 | Study43 | 0.4725124 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000151474_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000151474_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000151474_INFLUENCE.png")
ENSG00000167702
Statistics of ENSG00000167702 meta-analisys
kable(sig.genes.df['ENSG00000167702',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000167702 | KIFC2 | -0.4939861 | -0.4343287 | -0.3746713 | 0 | 1.87803 | 0.3910127 | 0.030438 | 0 | 0 | 1 | 0 | 0 | 42.59355 | 3 | 2 | Study43,GSE163577 | 0.1848826 | Study43,GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000167702_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000167702_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000167702_INFLUENCE.png")
ENSG00000168032
Statistics of ENSG00000168032 meta-analisys
kable(sig.genes.df['ENSG00000168032',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000168032 | ENTPD3 | -0.447647 | -0.3965205 | -0.3453939 | 0 | 0.05043 | 0.8223167 | 0.0260854 | 0 | 0 | 1 | 0 | 0 | 48.49774 | 2 | 2 | Study43 | 0.5007027 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000168032_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000168032_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000168032_INFLUENCE.png")
ENSG00000175426
Statistics of ENSG00000175426 meta-analisys
kable(sig.genes.df['ENSG00000175426',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000175426 | PCSK1 | -0.9303448 | -0.8610288 | -0.7917127 | 0 | 0.4933008 | 0.4824586 | 0.035366 | 0 | 0 | 1 | 0 | 0 | 126.0916 | 2 | 2 | Study43 | 0.5012013 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000175426_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000175426_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000175426_INFLUENCE.png")
ENSG00000178764
Statistics of ENSG00000178764 meta-analisys
kable(sig.genes.df['ENSG00000178764',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000178764 | ZHX2 | 0.6282233 | 0.7147249 | 0.8012265 | 0 | 0.867849 | 0.6479612 | 0.0441343 | 0 | 0 | 1 | 0 | 0 | 55.05493 | 3 | 3 | Study43 | 0.4304125 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000178764_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000178764_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000178764_INFLUENCE.png")
ENSG00000188229
Statistics of ENSG00000188229 meta-analisys
kable(sig.genes.df['ENSG00000188229',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000188229 | TUBB4B | -0.3998176 | -0.3546425 | -0.3094674 | 0 | 0.665253 | 0.717038 | 0.0230489 | 0 | 0 | 1 | 0 | 0 | 49.68336 | 3 | 3 | Study43 | 0.4280143 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000188229_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000188229_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000188229_INFLUENCE.png")
ENSG00000188730
Statistics of ENSG00000188730 meta-analisys
kable(sig.genes.df['ENSG00000188730',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000188730 | VWC2 | -0.7180604 | -0.6602811 | -0.6025017 | 0 | 0.607224 | 0.4358349 | 0.0294798 | 0 | 0 | 1 | 0 | 0 | 106.5785 | 2 | 2 | Study43 | 0.5037138 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000188730_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000188730_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000188730_INFLUENCE.png")
ENSG00000204071
Statistics of ENSG00000204071 meta-analisys
kable(sig.genes.df['ENSG00000204071',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000204071 | TCEAL6 | -0.4965898 | -0.4370494 | -0.3775091 | 0 | 0.0119006 | 0.9131312 | 0.0303783 | 0 | 0 | 1 | 0 | 0 | 43.30261 | 2 | 2 | Study43 | 0.5012971 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000204071_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000204071_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/F/plots/ENSG00000204071_INFLUENCE.png")
sessionInfo
date()## [1] "Sun May 25 16:04:17 2025"sessionInfo()## R version 4.2.2 (2022-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
##
## Matrix products: default
## BLAS/LAPACK: /opt/sci-soft/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64/libflexiblas.so.3.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] plotly_4.10.4 DT_0.26 knitr_1.41 ggplot2_3.5.2 dplyr_1.0.10 limma_3.54.0
## [7] tibble_3.1.8 metafor_3.8-1 metadat_1.2-0 Matrix_1.5-3 Biobase_2.58.0 BiocGenerics_0.44.0
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.0 xfun_0.35 bslib_0.4.2 purrr_0.3.5 lattice_0.20-45 vctrs_0.6.5
## [7] generics_0.1.3 htmltools_0.5.4 viridisLite_0.4.1 yaml_2.3.6 utf8_1.2.2 rlang_1.1.6
## [13] pillar_1.8.1 jquerylib_0.1.4 glue_1.6.2 withr_2.5.0 DBI_1.1.3 RColorBrewer_1.1-3
## [19] lifecycle_1.0.3 stringr_1.5.0 gtable_0.3.1 htmlwidgets_1.6.0 evaluate_0.19 labeling_0.4.2
## [25] fastmap_1.1.0 crosstalk_1.2.0 fansi_1.0.3 highr_0.9 scales_1.4.0 cachem_1.0.6
## [31] jsonlite_1.8.4 farver_2.1.1 png_0.1-8 digest_0.6.31 stringi_1.7.8 grid_4.2.2
## [37] mathjaxr_1.6-0 cli_3.4.1 tools_4.2.2 magrittr_2.0.3 sass_0.4.4 lazyeval_0.2.2
## [43] dichromat_2.0-0.1 tidyr_1.2.1 pkgconfig_2.0.3 ellipsis_0.3.2 data.table_1.14.6 assertthat_0.2.1
## [49] rmarkdown_2.19 httr_1.4.4 rstudioapi_0.14 R6_2.5.1 nlme_3.1-161 compiler_4.2.2